PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G00210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 364aa    MW: 41542.2 Da    PI: 6.8291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G00210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.71.3e-54171531129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                      +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++       ++++e++ewyfFs++dkky+tg+r+nrat++g+Wkatg
  OGLUM06G00210.1  17 VPPGFRFHPTDEELVDYYLRKKVAARRIDL-NVIKDVDLYKIEPWDLQErcringgSAAEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATG 109
                      69****************************.99**************9557777664455778******************************* PP

              NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +dk+++++  ++ lvg++ktLv+y+grap+g+k+dW+mheyrle
  OGLUM06G00210.1 110 RDKPIYATkqHSLLVGMRKTLVYYRGRAPNGHKSDWIMHEYRLE 153
                      ******98434445****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-607173IPR003441NAC domain
PROSITE profilePS5100559.60317173IPR003441NAC domain
PfamPF023652.2E-2818152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDGSSMSSSS TQQQAQVPPG FRFHPTDEEL VDYYLRKKVA ARRIDLNVIK DVDLYKIEPW  60
DLQERCRING GSAAEEQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKPIYATKQH  120
SLLVGMRKTL VYYRGRAPNG HKSDWIMHEY RLETSETAPP QEEGWVVCRV FKKRLPTTRR  180
DSDHDAPCGS WYVDEDAPGA FMSPMMITRS SILRPHQHHA GITLQEQHLH TTYKHRDLTS  240
KIQQLQVPAA GHHLLNTMPH DLESSTSSFH SLLVSPDHHQ INMHHAQADP FFDDMHAVDQ  300
ATTTDWRVLD KFVASQLSND ATNKPADHYT DEGDILQVSD KQQEVAAADY ASTSTSSSQI  360
DPWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-49111749169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340760.0JN634076.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642963.10.0PREDICTED: NAC domain-containing protein 105
RefseqXP_015642964.10.0PREDICTED: NAC domain-containing protein 105
SwissprotF4HYV51e-105NAC26_ARATH; NAC domain-containing protein 26
TrEMBLA0A0E0A3W20.0A0A0E0A3W2_9ORYZ; Uncharacterized protein
STRINGLOC_Os06g01480.10.0(Oryza sativa Japonica Group)
STRINGBGIOSGA022108-PA0.0(Oryza sativa Indica Group)
STRINGORGLA06G0002300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121023039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.12e-91Arabidopsis NAC domain containing protein 26